OTUbase

DOI: 10.18129/B9.bioc.OTUbase    

Provides structure and functions for the analysis of OTU data

Bioconductor version: Release (3.6)

Provides a platform for Operational Taxonomic Unit based analysis

Author: Daniel Beck, Matt Settles, and James A. Foster

Maintainer: Daniel Beck <danlbek at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OTUbase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OTUbase")

 

PDF	R Script	An introduction to OTUbase
PDF		Reference Manual

Details

biocViews	DataImport, Sequencing, Software
Version	1.28.0
In Bioconductor since	BioC 2.7 (R-2.12) (7.5 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), methods, S4Vectors, IRanges, ShortRead(>= 1.23.15), Biobase, vegan
Imports	Biostrings
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	mcaGUI
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OTUbase_1.28.0.tar.gz
Windows Binary	OTUbase_1.28.0.zip
Mac OS X 10.11 (El Capitan)	OTUbase_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OTUbase
Package Short Url	http://bioconductor.org/packages/OTUbase/
Package Downloads Report	Download Stats