MethTargetedNGS

DOI: 10.18129/B9.bioc.MethTargetedNGS    

Perform Methylation Analysis on Next Generation Sequencing Data

Bioconductor version: Release (3.6)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MethTargetedNGS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")

 

PDF	R Script	Introduction to MethTargetedNGS
PDF		Reference Manual

Details

biocViews	Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version	1.10.0
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	Artistic-2.0
Depends	R (>= 3.1.2), stringr, seqinr, gplots, Biostrings
Imports
LinkingTo
Suggests
SystemRequirements	HMMER3
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MethTargetedNGS_1.10.0.tar.gz
Windows Binary	MethTargetedNGS_1.10.0.zip
Mac OS X 10.11 (El Capitan)	MethTargetedNGS_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MethTargetedNGS
Package Short Url	http://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report	Download Stats