MSGFgui

DOI: 10.18129/B9.bioc.MSGFgui    

A shiny GUI for MSGFplus

Bioconductor version: Release (3.6)

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFgui")

Documentation

HTML	R Script	Using MSGFgui
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, MassSpectrometry, Proteomics, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	GPL (>= 2)
Depends	mzR, xlsx
Imports	shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools
LinkingTo
Suggests	knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	RforProteomics
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSGFgui_1.12.0.tar.gz
Windows Binary	MSGFgui_1.12.0.zip
Mac OS X 10.11 (El Capitan)	MSGFgui_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSGFgui
Package Short Url	http://bioconductor.org/packages/MSGFgui/
Package Downloads Report	Download Stats