DOI: 10.18129/B9.bioc.MBttest    

Multiple Beta t-Tests

Bioconductor version: Release (3.6)

MBttest method was developed from beta t-test method of Baggerly et al(2003). Compared to baySeq (Hard castle and Kelly 2010), DESeq (Anders and Huber 2010) and exact test (Robinson and Smyth 2007, 2008) and the GLM of McCarthy et al(2012), MBttest is of high work efficiency,that is, it has high power, high conservativeness of FDR estimation and high stability. MBttest is suit- able to transcriptomic data, tag data, SAGE data (count data) from small samples or a few replicate libraries. It can be used to identify genes, mRNA isoforms or tags differentially expressed between two conditions.

Author: Yuan-De Tan

Maintainer: Yuan-De Tan <tanyuande at gmail.com>

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PDF R Script Analysing RNA-Seq count data with the "MBttest" package
PDF   Reference Manual
Text   NEWS


biocViews AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, MultipleComparison, SAGE, Sequencing, Software, Transcription
Version 1.5.0
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License GPL-3
Depends R (>= 3.3.0), stats, gplots, gtools, graphics, base, utils, grDevices
Suggests BiocStyle, BiocGenerics
Depends On Me
Imports Me
Suggests Me
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Source Repository git clone https://git.bioconductor.org/packages/MBttest
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