INSPEcT

DOI: 10.18129/B9.bioc.INSPEcT    

Analysis of 4sU-seq and RNA-seq time-course data

Bioconductor version: Release (3.6)

INSPEcT (INference of Synthesis, Processing and dEgradation rates in Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in order to evaluate synthesis, processing and degradation rates and asses via modeling the rates that determines changes in mature mRNA levels.

Author: Stefano de Pretis

Maintainer: Stefano de Pretis <ste.depo at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("INSPEcT")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("INSPEcT")

 

PDF	R Script	INSPEcT
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse
Version	1.8.0
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL-2
Depends	R (>= 3.2), methods, Biobase, BiocParallel
Imports	pROC, deSolve, rootSolve, compiler, preprocessCore, GenomicFeatures, GenomicRanges, IRanges, BiocGenerics, GenomicAlignments, Rsamtools, S4Vectors
LinkingTo
Suggests	BiocStyle, knitr, TxDb.Mmusculus.UCSC.mm9.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	INSPEcT_1.8.0.tar.gz
Windows Binary	INSPEcT_1.8.0.zip
Mac OS X 10.11 (El Capitan)	INSPEcT_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/INSPEcT
Package Short Url	http://bioconductor.org/packages/INSPEcT/
Package Downloads Report	Download Stats