GenomicDataCommons

DOI: 10.18129/B9.bioc.GenomicDataCommons    

NIH / NCI Genomic Data Commons Access

Bioconductor version: Release (3.6)

Programmatically access the NIH / NCI Genomic Data Commons RESTful service.

Author: Martin Morgan [aut], Davis Sean [aut, cre]

Maintainer: Davis Sean <sdavis2 at mail.nih.gov>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicDataCommons")

Documentation

HTML	R Script	Introduction to Accessing the NCI Genomic Data Commons
PDF		Reference Manual

Details

biocViews	DataImport, Sequencing, Software
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	R (>= 3.4.0), magrittr
Imports	stats, httr, xml2, jsonlite, utils, lazyeval, readr, data.table, GenomicRanges, IRanges
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools
SystemRequirements
Enhances
URL	https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons
BugReports	https://github.com/Bioconductor/GenomicDataCommons/issues/new
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GenomicDataCommons_1.2.0.tar.gz
Windows Binary	GenomicDataCommons_1.2.0.zip
Mac OS X 10.11 (El Capitan)	GenomicDataCommons_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GenomicDataCommons
Package Short Url	http://bioconductor.org/packages/GenomicDataCommons/
Package Downloads Report	Download Stats