Doscheda

DOI: 10.18129/B9.bioc.Doscheda    

A DownStream Chemo-Proteomics Analysis Pipeline

Bioconductor version: Release (3.6)

Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment.

Author: Bruno Contrino, Dr Piero Ricchiuto

Maintainer: Bruno Contrino <br1contrino at yahoo.co.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Doscheda")

Documentation

HTML	R Script	Doscheda
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Regression, Software
Version	1.0.0
License	GPL-3
Depends	R (>= 3.4)
Imports	methods, drc, stats, httr, jsonlite, reshape2, vsn, affy, limma, stringr, ggplot2, graphics, grDevices, calibrate, corrgram, gridExtra, DT, shiny, shinydashboard, readxl, d3heatmap, prodlim, matrixStats
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Doscheda_1.0.0.tar.gz
Windows Binary	Doscheda_1.0.0.zip
Mac OS X 10.11 (El Capitan)	Doscheda_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Doscheda
Package Short Url	http://bioconductor.org/packages/Doscheda/
Package Downloads Report	Download Stats