DNABarcodes

DOI: 10.18129/B9.bioc.DNABarcodes    

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Bioconductor version: Release (3.6)

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

Author: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Maintainer: Tilo Buschmann <tilo.buschmann.ac at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNABarcodes")

Documentation

HTML	R Script	DNABarcodes
PDF		Reference Manual
Text		NEWS

Details

biocViews	Preprocessing, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 3.2 (R-3.2) (2.5 years)
License	GPL-2
Depends	Matrix, parallel
Imports	Rcpp (>= 0.11.2), BH
LinkingTo	Rcpp, BH
Suggests	knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DNABarcodes_1.8.0.tar.gz
Windows Binary	DNABarcodes_1.8.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	DNABarcodes_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DNABarcodes
Package Short Url	http://bioconductor.org/packages/DNABarcodes/
Package Downloads Report	Download Stats