DBChIP

DOI: 10.18129/B9.bioc.DBChIP    

Differential Binding of Transcription Factor with ChIP-seq

Bioconductor version: Release (3.6)

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DBChIP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")

 

PDF	R Script	DBChIP
PDF		Reference Manual

Details

biocViews	ChIPSeq, Genetics, Sequencing, Software, Transcription
Version	1.22.0
In Bioconductor since	BioC 2.11 (R-2.15) (5.5 years)
License	GPL (>= 2)
Depends	R (>= 2.15.0), edgeR, DESeq
Imports
LinkingTo
Suggests	ShortRead, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	metagene
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DBChIP_1.22.0.tar.gz
Windows Binary	DBChIP_1.22.0.zip
Mac OS X 10.11 (El Capitan)	DBChIP_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DBChIP
Package Short Url	http://bioconductor.org/packages/DBChIP/
Package Downloads Report	Download Stats