BCRANK

DOI: 10.18129/B9.bioc.BCRANK    

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: Release (3.6)

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BCRANK")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

 

PDF	R Script	BCRANK
PDF		Reference Manual

Details

biocViews	GeneRegulation, MotifDiscovery, Software
Version	1.40.0
In Bioconductor since	BioC 2.2 (R-2.7) (10 years)
License	GPL-2
Depends	methods
Imports	Biostrings
LinkingTo
Suggests	seqLogo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BCRANK_1.40.0.tar.gz
Windows Binary	BCRANK_1.40.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	BCRANK_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BCRANK
Package Short Url	http://bioconductor.org/packages/BCRANK/
Package Downloads Report	Download Stats