AMOUNTAIN

DOI: 10.18129/B9.bioc.AMOUNTAIN    

Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach

Bioconductor version: Release (3.6)

A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.

Author: Dong Li, Shan He, Zhisong Pan and Guyu Hu

Maintainer: Dong Li <dxl466 at cs.bham.ac.uk>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AMOUNTAIN")

Documentation

HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, Microarray, Network, Software
Version	1.4.0
In Bioconductor since	BioC 3.4 (R-3.3) (1.5 years)
License	GPL (>= 2)
Depends	R (>= 3.3.0)
Imports	stats
LinkingTo
Suggests	BiocStyle, qgraph, knitr, rmarkdown
SystemRequirements	gsl
Enhances
URL
Depends On Me
Imports Me	MODA
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AMOUNTAIN_1.4.0.tar.gz
Windows Binary	AMOUNTAIN_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	AMOUNTAIN_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AMOUNTAIN
Package Short Url	http://bioconductor.org/packages/AMOUNTAIN/
Package Downloads Report	Download Stats