AIMS

DOI: 10.18129/B9.bioc.AIMS    

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Bioconductor version: Release (3.6)

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

Author: Eric R. Paquet, Michael T. Hallett

Maintainer: Eric R Paquet <eric.r.paquet at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AIMS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AIMS")

 

PDF	R Script	AIMS An Introduction (HowTo)
PDF		Reference Manual
Text		README

Details

biocViews	Classification, GeneExpression, Microarray, RNASeq, Software
Version	1.10.0
In Bioconductor since	BioC 3.1 (R-3.2) (3 years)
License	Artistic-2.0
Depends	R (>= 2.10), e1071, Biobase
Imports
LinkingTo
Suggests	breastCancerVDX, hgu133a.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL	http://www.bci.mcgill.ca/AIMS
Depends On Me	genefu
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AIMS_1.10.0.tar.gz
Windows Binary	AIMS_1.10.0.zip
Mac OS X 10.11 (El Capitan)	AIMS_1.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AIMS
Package Short Url	http://bioconductor.org/packages/AIMS/
Package Downloads Report	Download Stats