loadGtexData {psichomics}R Documentation

Load GTEx data

Description

Load GTEx data

Usage

loadGtexData(clinical = NULL, sampleMetadata = NULL, junctionQuant = NULL,
  geneExpr = NULL, tissue = NULL)

Arguments

clinical

Character: path to subject information (the TXT file)

sampleMetadata

Character: path to sample metadata (the TXT file)

junctionQuant

Character: path to junction quantification

geneExpr

Character: path to gene read counts, RPKMs or TPMs

tissue

Character: tissue(s) of interest when loading data (all tissues are loaded by default); if only some tissue(s) are of interest, this may speed up loading the data

Value

List with loaded data


[Package psichomics version 1.4.5 Index]