runHeatmap {debrowser} | R Documentation |
Creates a heatmap based on the user selected parameters within shiny.
runHeatmap(data, title = "Title", dend = "both", names = FALSE, clustering_method = c("ward.D2", "complete", "single", "average", "mcquitty", "median", "centroid"), distance_method = c("euclidean", "cor", "maximum", "manhattan", "canberra", "binary", "minkowski"), interactive = FALSE)
data, |
a matrixthat includes expression values |
title, |
title of the heatmap |
dend, |
dendogram |
names, |
a flag to show the rownames |
clustering_method |
= c('complete', 'ward.D2', 'single', 'average', 'mcquitty', 'median' , 'centroid') |
distance_method |
= c('cor','euclidean', 'maximum', 'manhattan', 'canberra', 'binary' ,'minkowski') |
interactive, |
interactive heatmap |
heatmap.2 plot
x <- runHeatmap(mtcars)