runBayseq {debrowser} | R Documentation |
Run Bayseq algorithm on the selected conditions. Output is to be used for the interactive display.
runBayseq(data = NULL, columns = NULL, conds = NULL, rowsum.filter = 10)
data, |
A matrix that includes all the expression raw counts, rownames has to be the gene, isoform or region names/IDs |
columns, |
is a vector that includes the columns that are going to be analyzed. These columns has to match with the given data. |
conds, |
experimental conditions. The order has to match with the column order |
rowsum.filter, |
regions/genes/isoforms with total count (across all samples) below this value will be filtered out |
BaySeq results
x <- runBayseq()