readPathoscopeData {PathoStat}R Documentation

Reads the data from PathoScope reports and returns a list of final guess relative abundance and count data

Description

Reads the data from PathoScope reports and returns a list of final guess relative abundance and count data

Usage

readPathoscopeData(input_dir = ".",
    pathoreport_file_suffix = "-sam-report.tsv")

Arguments

input_dir

Directory where the tsv files from PathoScope are located

pathoreport_file_suffix

PathoScope report files suffix

Value

List of final guess relative abundance and count data

Examples

example_data_dir <- system.file("example/data", package = "PathoStat")
readPathoscopeData(input_dir=example_data_dir)

[Package PathoStat version 1.4.1 Index]