createPathoStat {PathoStat} | R Documentation |
Generates a PathoStat object from the PathoScope reports for further analysis using the interactive shiny app
createPathoStat(input_dir = ".", sample_data_file = "sample_data.tsv", pathoreport_file_suffix = "-sam-report.tsv")
input_dir |
Directory where the tsv files from PathoScope are located |
sample_data_file |
Sample Data file with information about samples |
pathoreport_file_suffix |
PathoScope report files suffix |
pstat The pathostat object generated from the given tsv files
example_data_dir <- system.file("example/data", package = "PathoStat") pstat <- createPathoStat(input_dir=example_data_dir, sample_data_file="sample_data.tsv")