lohSpec_fileGlob {GenVisR} | R Documentation |
Look in the specified file path and grab data with the proper extension for lohSpec
lohSpec_fileGlob(path, fileExt, step, window_size, gender)
path |
character string specifying which directory contains the sample information stored as datasets with columns "chromosome", "position", "n_vaf", "t_vaf", and "sample" (required if x is not specified) |
fileExt |
character string specifying the file extensions of files |
step |
integer with the length of divisions (bp) in chromosomes |
window_size |
Integer value specifying the size of the window in base pairs in which to calculate the mean Loss of Heterozygosity. |
gender |
vector of length equal to the number of samples, consisting of elements from the set "M", "F" |
object of class data frame from data specified in path for lohSpec