geneViz_extrCDS {GenVisR}R Documentation

Extract CDS

Description

Extract CDS coordinates within a GRanges object given a transcription database

Usage

geneViz_extrCDS(txdb = NULL, gr = NULL, reduce = FALSE, gaps = FALSE)

Arguments

txdb

A TxDb object for a genome

gr

A Granges object specifying the region of interest

reduce

Boolean specifying whether to collapse isoforms

gaps

Boolean specifying whether to report space between CDS instead of CDS

Value

Object of class Granges list


[Package GenVisR version 1.8.1 Index]