lohSpec_fileGlob {GenVisR}R Documentation

Grab data for lohSpec

Description

Look in the specified file path and grab data with the proper extension for lohSpec

Usage

lohSpec_fileGlob(path, fileExt, step, window_size, gender)

Arguments

path

character string specifying which directory contains the sample information stored as datasets with columns "chromosome", "position", "n_vaf", "t_vaf", and "sample" (required if x is not specified)

fileExt

character string specifying the file extensions of files

step

integer with the length of divisions (bp) in chromosomes

window_size

Integer value specifying the size of the window in base pairs in which to calculate the mean Loss of Heterozygosity.

gender

vector of length equal to the number of samples, consisting of elements from the set "M", "F"

Value

object of class data frame from data specified in path for lohSpec


[Package GenVisR version 1.8.1 Index]