cnView_qual {GenVisR} | R Documentation |
Perform a data quality check for inputs to cnView
cnView_qual(x, y, z, genome, CNscale)
x |
a data frame with columns chromosome, coordinate, cn |
y |
a data frame with columns "chrom", "chromStart", "chromEnd", "name", "gieStain" |
z |
a data frame with columns chromosome, start, end , segmean |
genome |
character string specifying UCSC genome to use |
CNscale |
Character string specifying if copy number calls supplied are relative (i.e.copy neutral == 0) or absolute (i.e. copy neutral ==2). One of "relative" or "absolute" |
a list of data frames passing quality checks