BASiCS_DenoisedRates {BASiCS} | R Documentation |
Calculates normalised and denoised expression rates, by removing the effect of technical variation.
BASiCS_DenoisedRates(Data, Chain, Propensities = FALSE)
Data |
an object of class |
Chain |
an object of class |
Propensities |
If |
See vignette
A matrix of denoised expression rates (biological genes only)
Catalina A. Vallejos cnvallej@uc.cl
Vallejos, Marioni and Richardson (2015). PLoS Computational Biology.
Data <- makeExampleBASiCS_Data(WithSpikes = TRUE) Chain <- BASiCS_MCMC(Data, N = 10000, Thin = 10, Burn = 5000, PrintProgress = FALSE) DR <- BASiCS_DenoisedRates(Data, Chain)