plot-BASiCS_Chain-method {BASiCS}R Documentation

'plot' method for BASiCS_Chain objects

Description

'plot' method for BASiCS_Chain objects

Usage

## S4 method for signature 'BASiCS_Chain,ANY'
plot(x, Param = "mu", Gene = NULL,
  Cell = NULL, Batch = 1, ylab = "", xlab = "", ...)

Arguments

x

A BASiCS_Chain object.

Param

Name of the slot to be used for the plot. Possible values: 'mu', 'delta', 'phi', 's', 'nu' and 'theta'

Gene

Specifies which gene is requested. Required only if Param = 'mu' or 'delta'

Cell

Specifies which cell is requested. Required only if Param = 'phi', 's' or 'nu'

Batch

Specifies which batch is requested. Required only if Param = 'theta'

ylab

As in par.

xlab

As in par.

...

Other graphical parameters (see par).

Value

A plot object

Author(s)

Catalina A. Vallejos cnvallej@uc.cl

References

Vallejos, Marioni and Richardson (2015). PLoS Computational Biology.

Examples


# See
help(BASiCS_MCMC)


[Package BASiCS version 1.0.1 Index]