BASiCS_Summary {BASiCS} | R Documentation |
Container of a summary of a BASiCS_Chain
object. In each slot, first column contains posterior medians; second and
third columns respectively contain the lower and upper limits of an high
posterior density interval (for a given probability).
parameters
List of parameters in which each entry contains a matrix: first column contains posterior medians, second column contains the lower limits of an high posterior density interval and third column contains the upper limits of high posterior density intervals.
Posterior medians (1st column), lower (2nd column) and upper (3rd column) limits of gene-specific mean expression parameters μ_i.
Posterior medians (1st column), lower (2nd column) and upper (3rd column) limits of gene-specific biological over-dispersion parameters δ_i, biological genes only
Posterior medians (1st column), lower (2nd column) and upper (3rd column) limits of cell-specific mRNA content normalisation parameters φ_j
Posterior medians (1st column), lower (2nd column) and upper (3rd column) limits of cell-specific technical normalisation parameters s[j]
Posterior medians (1st column), lower (2nd column) and upper (3rd column) limits of cell-specific random effects ν_j
Posterior median (1st column), lower (2nd column) and upper (3rd column) limits of technical over-dispersion parameter(s) θ (each row represents one batch)
# A BASiCS_Summary object created by the Summary method. Data = makeExampleBASiCS_Data() Chain <- BASiCS_MCMC(Data, N = 100, Thin = 2, Burn = 2) ChainSummary <- Summary(Chain)