adjustedAlphaLevel-method | Get adjusted significance level from the screening stage. |
esetProstate | Transcript-level abundance estimates in 14 Chinese prostate cancer patients |
getAdjustedPValues-method | Retrieve the stage-wise adjusted p-values. |
getAlpha-method | Retrieve the significance level for the stage-wise adjustment. |
getMethod-method | Retrieve FWER correction method. |
getPConfirmation-method | Return unadjusted confirmation hypothesis p-values from a 'stageRClass' object. |
getPScreen-method | Return screening hypothesis p-values from a 'stageRClass' object. |
getResults-method | Get significance results according to a stage-wise analysis. |
getSignificantGenes-method | Return significant genes when performing transcript-level analysis. |
getSignificantTx-method | Return significant transcripts when performing transcript-level analysis. |
getTx2gene-method | Retrieve the data frame linking genes to transcripts. |
hammer.eset | Hammer dataset |
isAdjusted-method | Has stage-wise adjustment already been performed on the object? |
isPScreenAdjusted-method | Are the screening p-values adjusted for multiplicity? |
stageR | Create stageR object |
stageRClass | The stageR class |
stageRTx | Create stageRTx object. |
stageRTxClass | The stageR class |
stageWiseAdjustment-method | adjust p-values in a two-stage analysis |