seqplots-package | SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps. |
getPlotSetArray | Process genomic signal |
MotifSetup | MotifSetup Reference Class |
MotifSetup-class | MotifSetup Reference Class |
plot | Generic plot function for SeqPlots package calsses |
plot-method | Generic plot function for SeqPlots package calsses |
plotAverage | Create the average plot |
plotAverage-method | Create the average plot |
plotHeatmap | Plot heatmap with optional clustering |
plotHeatmap-method | Plot heatmap with optional clustering |
PlotSetArray | PlotSetArray Reference Class |
PlotSetArray-class | PlotSetArray Reference Class |
PlotSetList | PlotSetList Reference Class |
PlotSetList-class | PlotSetList Reference Class |
PlotSetPair | PlotSetPair Reference Class |
PlotSetPair-class | PlotSetPair Reference Class |
run | SeqPlots innitiation |
seqplots | SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps. |
seqplots-generic | SeqPlots generic methods |
[-method | SeqPlots generic methods |
[[-method | SeqPlots generic methods |