R implementation from MAT program to normalize and analyze tiling arrays and ChIP-chip data.


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Documentation for package ‘rMAT’ version 3.28.0

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%in%-method This object contains an ExpressionSet
BPMAPCelParser BPMAP and CEL files Reader
callEnrichedRegions Detection of enriched regions
callEnrichedRegions-defunct Detection of enriched regions
computeMATScore Detection of enriched regions
MATScore Detection of enriched regions
NormalizeProbes Normalize tiling array data using sequence information
rbind-method This object contains an ExpressionSet
ReadBPMAPAllSeqHeader Reading All the BPMAP Sequence Header
show-method show Method for tiling set object
summary-method Summary Method for MAT Object
tilingSet This object contains an ExpressionSet
tilingSet-class This object contains an ExpressionSet