pbcmcPackage-package |
Permutation-Based Confidence for Molecular Classification (pbcmc) |
annotation |
Accessors for MolecularPermutationClassifier child class slots |
annotation-method |
Accessors for MolecularPermutationClassifier child class slots |
annotation<- |
Accessors for MolecularPermutationClassifier child class slots |
annotation<--method |
Accessors for MolecularPermutationClassifier child class slots |
as |
'PAM50' high level coerce functions |
as.PAM50 |
'PAM50' high level coerce functions |
as.PAM50-method |
'PAM50' high level coerce functions |
as.PAM50-methods |
'PAM50' high level coerce functions |
classification |
Accessors for MolecularPermutationClassifier child class slots |
classification-method |
Accessors for MolecularPermutationClassifier child class slots |
classification-methods |
Accessors for MolecularPermutationClassifier child class slots |
classify |
Virtual functions for MolecularPermutationClassifier hierarchy |
classify-method |
'classify' subjects with PAM50 molecular signature |
classify-methods |
Virtual functions for MolecularPermutationClassifier hierarchy |
databaseReport |
Virtual functions for MolecularPermutationClassifier hierarchy |
databaseReport-method |
PAM50 permutation test results reports |
databaseReport-methods |
Virtual functions for MolecularPermutationClassifier hierarchy |
exprs |
Accessors for MolecularPermutationClassifier child class slots |
exprs-method |
Accessors for MolecularPermutationClassifier child class slots |
exprs<- |
Accessors for MolecularPermutationClassifier child class slots |
exprs<--method |
Accessors for MolecularPermutationClassifier child class slots |
filtrate |
Virtual functions for MolecularPermutationClassifier hierarchy |
filtrate-method |
'filtrate' centroid genes from PAM50 classification |
filtrate-methods |
Virtual functions for MolecularPermutationClassifier hierarchy |
loadBCDataset |
MolecularPermutationClassifier high level constructor |
loadBCDataset-method |
MolecularPermutationClassifier high level constructor |
loadBCDataset-methods |
MolecularPermutationClassifier high level constructor |
MolecularPermutationClassifier-class |
Class 'MolecularPermutationClassifier' S4 implementation in R |
PAM50 |
PAM50 S4 implementation in R |
PAM50-class |
PAM50 S4 implementation in R |
pam50centroids |
Example PAM50 objects for pbcmc package |
parameters |
Accessors for MolecularPermutationClassifier child class slots |
parameters-method |
Accessors for MolecularPermutationClassifier child class slots |
parameters-methods |
Accessors for MolecularPermutationClassifier child class slots |
parameters<- |
Accessors for MolecularPermutationClassifier child class slots |
parameters<--method |
Accessors for MolecularPermutationClassifier child class slots |
parameters<--methods |
Accessors for MolecularPermutationClassifier child class slots |
pbcmcPackage |
Permutation-Based Confidence for Molecular Classification (pbcmc) |
permutate |
Virtual functions for MolecularPermutationClassifier hierarchy |
permutate-method |
'permutate' subject gene-expression for PAM50 confidence |
permutate-methods |
Virtual functions for MolecularPermutationClassifier hierarchy |
permutation |
Accessors for MolecularPermutationClassifier child class slots |
permutation-method |
Accessors for MolecularPermutationClassifier child class slots |
permutation-methods |
Accessors for MolecularPermutationClassifier child class slots |
show |
'Show' a MolecularPermutationClassifier subclass object |
show-method |
'Show' a MolecularPermutationClassifier subclass object |
subjectReport |
Virtual functions for MolecularPermutationClassifier hierarchy |
subjectReport-method |
PAM50 permutation test results reports |
subjectReport-methods |
Virtual functions for MolecularPermutationClassifier hierarchy |
subtypes |
Virtual functions for MolecularPermutationClassifier hierarchy |
subtypes-method |
Subject 'subtypes' for PAM50 adaptation with permuted results. |
subtypes-methods |
Virtual functions for MolecularPermutationClassifier hierarchy |
summary-method |
PAM50 permutation test results reports |
targets |
Accessors for MolecularPermutationClassifier child class slots |
targets-method |
Accessors for MolecularPermutationClassifier child class slots |
targets-methods |
Accessors for MolecularPermutationClassifier child class slots |
targets<- |
Accessors for MolecularPermutationClassifier child class slots |
targets<--method |
Accessors for MolecularPermutationClassifier child class slots |
targets<--methods |
Accessors for MolecularPermutationClassifier child class slots |