Multiple co-inertia analysis of omics datasets


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Documentation for package ‘omicade4’ version 1.18.0

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omicade4-package multiple co-inertia analysis of omics datasets
mcia multiple co-inertia analysis
NCI60_4arrays Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
omicade4 multiple co-inertia analysis of omics datasets
plot.mcia multiple co-inertia analysis
plotVar Plot variable (gene) spaces of result from MCIA or CIA
plotVar.cia Plot variable space of result from 'cia'
plotVar.mcia Plot variable space of result from 'mcia'
selectVar Selecting variables (genes) from result of MCIA or CIA according to co-ordinates
selectVar.cia Selecting variables from result of CIA
selectVar.mcia Selecting variables from result of MCIA
topVar Selecting top weighted variables (genes) from result of MCIA or CIA
topVar.cia Selecting top weighted variables (genes) from result of CIA
topVar.mcia Selecting top weighted variables (genes) from result of MCIA