affy |
Greene-5P01NS017771-220003: Microarray expression experiment related with Parkinson disease. |
CCP |
Finding Common Connection Pattern between different networks. |
cofVar |
Calculating the coefficient of variation for expression matrix. |
createNet |
Creating a co-expression network from expression matrix. |
difExprs |
Differential expression analysis using two different methods. |
exprMat |
Calculate the expression matrix from the raw expression data. |
findThreshold |
Find the threshold value to create a co-expression network |
geneSymbol |
Create a table relating probesets with genes |
getAffy |
Charge and create an AffyBatch object |
getInfo |
Download raw expression data from GEO DataSet |
info |
Table with the relation between the probesets and the corresponding gene. |
net1 |
Simulated network #1 |
net2 |
Simulated network #2 |
ppiNet |
Create a protein-protein interaction network |
sharedComponents |
Finding shared components between diferent networks. |