An integrated analysis package of miRNA and mRNA expression data


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Documentation for package ‘anamiR’ version 1.6.1

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anamiR-package anamiR: An integrated analysis package of miRNA and mRNA expression data.
anamiR anamiR: An integrated analysis package of miRNA and mRNA expression data.
database_support Intersect with databases for potential miRNA-target gene interactions
differExp_continuous Find differential expression genes or miRNAs from given expression data
differExp_discrete Find differential expression genes or miRNAs from given expression data
egSymb A table with information of gene symbol and gene ID
enrichment Enrich pathways with genes from putative miRNA-target gene interactions.
GSEA_ana This function will do function driven analysis.
GSEA_res Pipeline of anamiR is applied to given output from GSEA_ana.
heat_vis Using correlation information to draw a heatmaps
mirna miRNA expression data about breast cancer
miR_converter Convert miRNA annotation to the miRBase 21 version
mrna mRNA expression data about breast cancer
msigdb.gs MsigDB C2 pathways with gene set information
multi_Differ Find differential expression groups of each genes or miRNA from expression data
negative_cor Find the correlation coefficient between each gene and miRNA.
normalization Normalize expression data
pheno.mirna phenotype data of 'mirna' about breast cancer
pheno.mrna phenotype data of 'mrna' about breast cancer
table_pre A list with information of genes and miRNAs.