Survival analysis using transcriptional networks inferred by the RTN package


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Documentation for package ‘RTNsurvival’ version 1.2.0

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RTNsurvival-package Performs survival analysis using transcriptional networks inferred by the RTN package.
dualCoxTable Cox regression analysis for dual regulons
dualSurvivalPanel Panel plot of regulons in a inferred dual
dualSurvivalPanel-method Panel plot of regulons in a inferred dual
RTNsurvival Performs survival analysis using transcriptional networks inferred by the RTN package.
survival.data A pre-processed dataset for demonstration purposes only.
TNS TNS: An S4 class for survival survival analysis using transcriptional networks inferred by the RTN package.
TNS-class TNS: An S4 class for survival survival analysis using transcriptional networks inferred by the RTN package.
tnsCox Cox regression analysis for TNS class objects.
tnsCox-method Cox regression analysis for TNS class objects.
tnsGet Get information from slots in a TNS object
tnsGet-method Get information from slots in a TNS object
tnsGSEA2 2-tailed Gene Set Enrichment Analysis on Transcriptional Networks.
tnsGSEA2-method 2-tailed Gene Set Enrichment Analysis on Transcriptional Networks.
tnsKM Kaplan-Meier analysis for TNS class objects.
tnsKM-method Kaplan-Meier analysis for TNS class objects.
tnsPlotGSEA2 Plot 2-tailed GSEA for a sample from a TNS
tnsPreprocess Preprocessing of TNS class objects.
tnsPreprocess-method Preprocessing of TNS class objects.