Classification and Feature Selection for 'Omics' Datasets


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Documentation for package ‘OmicsMarkeR’ version 1.10.0

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aggregation Feature Aggregation
bagging.wrapper Bagging Wrapper for Ensemble Features Selection
canberra Canberra Distance
canberra_stability Canberra Stability
CLA Complete Linear Aggregation
create.corr.matrix Correlated Multivariate Data Generator
create.discr.matrix Discriminatory Multivariate Data Generator
create.random.matrix Random Multivariate Data Generator
denovo.grid Denovo Grid Generation
EE Ensemble Exponential Aggregation
EM Ensemble Mean Aggregation
ES Ensemble Stability Aggregation
extract.args Argument extractor
extract.features Feature Extraction
feature.table Feature Consistency Table
fit.only.model Fit Models without Feature Selection
fs.ensembl.stability Ensemble Classification & Feature Selection
fs.stability Classification & Feature Selection
jaccard Jaccard Index
kuncheva Kuncheva's Index
modelList Model List
modelTuner Model Tuner
modelTuner_loo Model Tuner for Leave-One-Out Cross-Validation
noise.matrix Noise Matrix Generator
ochiai Ochiai's Index
optimize.model Model Optimization and Metrics
pairwise.model.stability Pairwise Model Stability Metrics
pairwise.stability Pairwise Stability Metrics
params Model Parameters and Properties
perf.calc Performance Statistics Calculations
performance.metrics Performance Metrics of fs.stability or fs.ensembl.stability object
performance.stats Performance Statistics (Internal for 'perf.calc')
perm.class Monte Carlo Permutation of Model Performance
perm.features Feature Selection via Monte Carlo Permutation
pof Percentage of Overlapping Features
predicting Model Group Prediction
prediction.metrics Prediction Metric Calculations
predictNewClasses Class Prediction
RPT Robustness-Performance Trade-Off
sequester Sequester Additional Parameters
sorensen Dice-Sorensen's Index
spearman Spearman Rank Correlation Coefficient
svm.weights SVM Multiclass Weights Ranking
svmrfeFeatureRanking SVM Recursive Feature Extraction (Binary)
svmrfeFeatureRankingForMulticlass SVM Recursive Feature Extraction (Multiclass)
training Model Training
tune.instructions Model Optimization Instructions