GRridge-package |
Implements adaptive group-regularized (logistic) ridge regression by use of co-data. |
annotationWurdinger |
R-objects related to the mRNAseq data |
auc |
Area under the ROC curve |
coDataWurdinger |
R-objects related to the mRNAseq data |
CpGann |
Contains 5 R-objects, including the data and the binary response |
CpGannFarkas |
Contains three R-objects, including the data and the binary response |
CreatePartition |
Creates a partition (groups) of variables |
dataFarkas |
Contains three R-objects, including the data and the binary response |
dataVerlaat |
Contains 5 R-objects, including the data and the binary response |
dataWurdinger |
R-objects related to the mRNAseq data |
datcenFarkas |
Contains three R-objects, including the data and the binary response |
datcenVerlaat |
Contains 5 R-objects, including the data and the binary response |
datWurdinger_BC |
R-objects related to the mRNAseq data |
diffmeanFarkas |
Contains 5 R-objects, including the data and the binary response |
GRridge |
Implements adaptive group-regularized (logistic) ridge regression by use of co-data. |
grridge |
Group-regularized (logistic) ridge regression |
grridgeCV |
Returns the cross-validated predictions |
hello |
Hello, World! |
matchGeneSets |
Creates a grouping of variables (genes) from gene sets |
mergeGroups |
Merge groups in a partition |
PartitionsSelection |
Co-data selection in a Group-regularized ridge regression model |
predict |
Predictions for new samples |
predict.grridge |
Predictions for new samples |
pvalFarkas |
Contains 5 R-objects, including the data and the binary response |
respFarkas |
Contains three R-objects, including the data and the binary response |
respVerlaat |
Contains 5 R-objects, including the data and the binary response |
respWurdinger |
R-objects related to the mRNAseq data |
roc |
Produces ROC curve for probabilistic classifiers (e.g. logistic regression) |