DMRcaller-package | Call Differentially Methylated Regions (DMRs) between two samples |
analyseReadsInsideRegionsForCondition | Analyse reads inside regions for condition |
computeDMRs | Compute DMRs |
computeMethylationDataCoverage | Compute methylation data coverage |
computeMethylationProfile | Compute methylation profile |
computeOverlapProfile | Compute Overlaps Profile |
DMRcaller | Call Differentially Methylated Regions (DMRs) between two samples |
DMRsNoiseFilterCG | The DMRs between WT and met1-3 in CG context |
filterDMRs | Filter DMRs |
GEs | The genetic elements data |
getWholeChromosomes | Get whole chromosomes from methylation data |
mergeDMRsIteratively | Merge DMRs iteratively |
methylationDataList | The methylation data list |
plotLocalMethylationProfile | Plot local methylation profile |
plotMethylationDataCoverage | Plot methylation data coverage |
plotMethylationProfile | Plot Methylation Profile |
plotMethylationProfileFromData | Plot methylation profile from data |
plotOverlapProfile | Plot overlap profile |
poolMethylationDatasets | Pool methylation data |
poolTwoMethylationDatasets | Pool two methylation datasets |
readBismark | Read Bismark |
readBismarkPool | Read Bismark pool |
saveBismark | Save Bismark |