actualClasses | Container for Storing Classification Results |
actualClasses-method | Container for Storing Classification Results |
bartlettSelection | Selection of Differential Variability with Bartlett Statistic |
bartlettSelection-method | Selection of Differential Variability with Bartlett Statistic |
calcPerformance | Add Performance Calculations to a ClassifyResult object |
calcPerformance-method | Add Performance Calculations to a ClassifyResult object |
classifyInterface | Interface for PoiClaClu Package's Classify Function |
ClassifyResult | Container for Storing Classification Results |
ClassifyResult-class | Container for Storing Classification Results |
ClassifyResult-method | Container for Storing Classification Results |
distribution | Get Frequencies of Feature Selection and Sample Errors |
distribution-method | Get Frequencies of Feature Selection and Sample Errors |
DMDselection | Selection of Differential Distributions with Differences in Means or Medians and a Deviation Measure |
DMDselection-method | Selection of Differential Distributions with Differences in Means or Medians and a Deviation Measure |
edgeRselection | Feature Selection Based on Differential Expression for RNA-seq |
edgeRselection-method | Feature Selection Based on Differential Expression for RNA-seq |
features | Container for Storing Classification Results |
features-method | Container for Storing Classification Results |
fisherDiscriminant | Classification Using Fisher's LDA |
fisherDiscriminant-method | Classification Using Fisher's LDA |
functionOrList | Union of Functions and List of Functions |
functionOrList-class | Union of Functions and List of Functions |
getLocationsAndScales | Calculate Location and Scale |
getLocationsAndScales-method | Calculate Location and Scale |
KolmogorovSmirnovSelection | Selection of Differential Distributions with Kolmogorov-Smirnov Distance |
KolmogorovSmirnovSelection-method | Selection of Differential Distributions with Kolmogorov-Smirnov Distance |
KullbackLeiblerSelection | Selection of Differential Distributions with Kullback Leibler Distance |
KullbackLeiblerSelection-method | Selection of Differential Distributions with Kullback Leibler Distance |
leveneSelection | Selection of Differential Variability with Levene Statistic |
leveneSelection-method | Selection of Differential Variability with Levene Statistic |
likelihoodRatioSelection | Selection of Differential Distributions with Likelihood Ratio Statistic |
likelihoodRatioSelection-method | Selection of Differential Distributions with Likelihood Ratio Statistic |
limmaSelection | Selection of Differentially Expressed Features |
limmaSelection-method | Selection of Differentially Expressed Features |
medianDifferenceSelection | Selection of Differential Expression by Comparing Differences in Medians of Groups |
medianDifferenceSelection-method | Selection of Differential Expression by Comparing Differences in Medians of Groups |
mixmodels | Selection of Differential Distributions with Mixtures of Normals |
mixModelsTest | Selection of Differential Distributions with Mixtures of Normals |
mixModelsTest-method | Selection of Differential Distributions with Mixtures of Normals |
mixModelsTrain | Selection of Differential Distributions with Mixtures of Normals |
mixModelsTrain-method | Selection of Differential Distributions with Mixtures of Normals |
naiveBayesKernel | Classification Using A Bayes Classifier with Kernel Density Estimates |
naiveBayesKernel-method | Classification Using A Bayes Classifier with Kernel Density Estimates |
nearestShrunkenCentroidPredictInterface | Interface for 'pamr.predict' Function from 'pamr' CRAN Package |
nearestShrunkenCentroidPredictInterface-method | Interface for 'pamr.predict' Function from 'pamr' CRAN Package |
nearestShrunkenCentroidSelectionInterface | Interface for 'pamr.listgenes' Function from 'pamr' CRAN Package |
nearestShrunkenCentroidSelectionInterface-method | Interface for 'pamr.listgenes' Function from 'pamr' CRAN Package |
nearestShrunkenCentroidTrainInterface | Interface for 'pamr.train' Function from 'pamr' CRAN Package |
nearestShrunkenCentroidTrainInterface-method | Interface for 'pamr.train' Function from 'pamr' CRAN Package |
pamrtrained | Trained pamr Object |
pamrtrained-class | Trained pamr Object |
performance | Container for Storing Classification Results |
performance-method | Container for Storing Classification Results |
performancePlot | Plot Performance Measures for Various Classifications |
performancePlot-method | Plot Performance Measures for Various Classifications |
plotFeatureClasses | Plot Density and Scatterplot for Genes By Class |
plotFeatureClasses-method | Plot Density and Scatterplot for Genes By Class |
predictions | Container for Storing Classification Results |
predictions-method | Container for Storing Classification Results |
PredictParams | Parameters for Classifier Prediction |
PredictParams-class | Parameters for Classifier Prediction |
PredictParams-method | Parameters for Classifier Prediction |
previousSelection | Automated Selection of Previously Selected Features |
previousSelection-method | Automated Selection of Previously Selected Features |
rankingPlot | Plot Pair-wise Overlap of Ranked Features |
rankingPlot-method | Plot Pair-wise Overlap of Ranked Features |
ResubstituteParams | Parameters for Resubstitution Error Calculation |
ResubstituteParams-class | Parameters for Resubstitution Error Calculation |
ResubstituteParams-method | Parameters for Resubstitution Error Calculation |
ROCplot | Plot Receiver Operating Curve Graphs for Classification Results |
ROCplot-method | Plot Receiver Operating Curve Graphs for Classification Results |
runTest | Perform a Single Classification |
runTest-method | Perform a Single Classification |
runTests | Reproducibly Run Various Kinds of Cross-Validation |
runTests-method | Reproducibly Run Various Kinds of Cross-Validation |
samplesMetricMap | Plot a Grid of Sample Error Rates or Accuracies |
samplesMetricMap-method | Plot a Grid of Sample Error Rates or Accuracies |
selectionPlot | Plot Pair-wise Overlap or Selection Size Distribution of Selected Features |
selectionPlot-method | Plot Pair-wise Overlap or Selection Size Distribution of Selected Features |
SelectParams | Parameters for Feature Selection |
SelectParams-class | Parameters for Feature Selection |
SelectParams-method | Parameters for Feature Selection |
SelectResult | Container for Storing Feature Selection Results |
SelectResult-class | Container for Storing Feature Selection Results |
SelectResult-method | Container for Storing Feature Selection Results |
show-method | Container for Storing Classification Results |
show-method | Container for Storing Feature Selection Results |
subtractFromLocation | Subtract All Feature Measurements from Location |
subtractFromLocation-method | Subtract All Feature Measurements from Location |
totalPredictions | Container for Storing Classification Results |
totalPredictions-method | Container for Storing Classification Results |
TrainParams | Parameters for Classifier Training |
TrainParams-class | Parameters for Classifier Training |
TrainParams-method | Parameters for Classifier Training |
TransformParams | Parameters for Data Transformation |
TransformParams-class | Parameters for Data Transformation |
TransformParams-method | Parameters for Data Transformation |
tunedParameters | Container for Storing Classification Results |
tunedParameters-method | Container for Storing Classification Results |