Classification for Biological Sequences


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Documentation for package ‘BioSeqClass’ version 1.36.0

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.callPerl Assistant Functions
.onLoad Load packages and data
.pathPerl Assistant Functions
aa.index Assistant Functions
aaClass Assistant Functions
aligndisHR Homolog Reduction
basic Assistant Functions
cdhitHR Homolog Reduction
classify Classification with Specific Features and Cross-Validation
classifyModelBAG Classification Models
classifyModelCTREE Classification Models
classifyModelCTREELIBSVM Classification Models
classifyModelKNN Classification Models
classifyModelLIBSVM Classification Models
classifyModelNB Classification Models
classifyModelNNET Classification Models
classifyModelRF Classification Models
classifyModelRPART Classification Models
classifyModelSVMLIGHT Classification Models
classifyModelTree Classification Models
DiProDB Assistant Functions
distance Homolog Reduction
dssp.ss Assistant Functions
elements Assistant Functions
featureAAindex Feature Coding by physicochemical/biochemical properties in AAindex
featureACF Feature Coding by physicochemical/biochemical properties in AAindex
featureACH Feature Coding by hydrophobicity
featureACI Feature Coding by physicochemical/biochemical properties in AAindex
featureBDNAVIDEO Feature Coding by DNA/RNA property
featureBinary Feature Coding by Binary Vectors
featureCKSAAP Feature Coding by k-spaced Aminoacids/Base Pairs
featureCTD Feature Coding by composition, transition and distribution
featureDIPRODB Feature Coding by Dinucleotide Property
featureDOMAIN Feature Coding by doamin organization
featureEvaluate Evaluate Different Feature Coding Schemas
featureFragmentComposition Feature Coding by the composition of k-mer fragments
featureGapPairComposition Feature Coding by g-spaced aminoacids/bases pairs
featureHydro Feature Coding by hydrophobicity
featurePseudoAAComp Feature Coding by Pseudo Amino Acid Composiion
featurePSSM Feature Coding
featureSSC Feature Coding by secondary structure
getDSSP Feature Coding by secondary structure
getNegSite Homolog Reduction
getTrain Homolog Reduction
hr Homolog Reduction
model Classification Models
performance Performance Evaluation
predictPFAM Feature Coding by doamin organization
predictPROTEUS Feature Coding by secondary structure
PROPERTY Assistant Functions
pwm Assistant Functions
selectFFS feature forward selection
selectWeka Feature Selection by Weka
sub.seq Assistant Functions