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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("simpIntLists")
In most cases, you don't need to download the package archive at all.
simpIntLists
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The package contains BioGRID interactions for various organisms in a simple format
Bioconductor version: Release (3.5)
The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.
Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay
Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>
Citation (from within R,
enter citation("simpIntLists")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("simpIntLists")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("simpIntLists")
| R Script | simpIntLists | |
| Reference Manual |
Details
| biocViews | Arabidopsis_thaliana_Data, ExperimentData |
| Version | 1.12.0 |
| License | GPL (>= 2) |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | ibh |
| Imports Me | |
| Suggests Me | GeneNetworkBuilder |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | simpIntLists_1.12.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/simpIntLists |
| Package Short Url | http://bioconductor.org/packages/simpIntLists/ |
| Package Downloads Report | Download Stats |
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