- Home
- Bioconductor 3.5
- Software Packages
- Rhtslib
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rhtslib")
In most cases, you don't need to download the package archive at all.
Rhtslib
|
|
|
|
|
HTSlib high-throughput sequencing library as an R package
Bioconductor version: Release (3.5)
This package provides version 1.1 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [led, aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("Rhtslib")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rhtslib")
Documentation
| HTML | R Script | Motivation and Use of Rhtslib |
| Reference Manual |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
| License | LGPL (>= 2) |
| Depends | |
| Imports | zlibbioc |
| LinkingTo | zlibbioc |
| Suggests | BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/nhayden/Rhtslib http://www.htslib.org/ |
| BugReports | https://github.com/nhayden/Rhtslib |
| Depends On Me | deepSNV |
| Imports Me | csaw, deepSNV, diffHic |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rhtslib_1.8.0.tar.gz |
| Windows Binary | Rhtslib_1.8.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | Rhtslib_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rhtslib |
| Package Short Url | http://bioconductor.org/packages/Rhtslib/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
