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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Logolas")
In most cases, you don't need to download the package archive at all.
Logolas
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Flexible and Customized Logo Plots using symbols, alphabets, numbers and alphanumeric strings
Bioconductor version: Release (3.5)
Produces logo plots of a variety of symbols and names comprising English alphabets, numerics and punctuations. Can be used for sequence motif generation, mutation pattern generation, protein amino acid geenration and symbol strength representation in any generic context.
Author: Kushal Dey [aut, cre]
Maintainer: Kushal Dey <kkdey at uchicago.edu>
Citation (from within R,
enter citation("Logolas")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Logolas")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Logolas")
| R Script | Flexible Logo plots of symbols and alphanumeric strings using Logolas | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Alignment, SequenceMatching, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | grid, graphics |
| LinkingTo | |
| Suggests | knitr, BiocStyle, Biobase, roxygen2, devtools, xtable, gridExtra, RColorBrewer, seqLogo, aRxiv |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/kkdey/Logolas |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Logolas_1.0.0.tar.gz |
| Windows Binary | Logolas_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | Logolas_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Logolas |
| Package Short Url | http://bioconductor.org/packages/Logolas/ |
| Package Downloads Report | Download Stats |
Documentation »
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