Quantify and interpret divers of variation in multilevel gene expression experiments


[Up] [Top]

Documentation for package ‘variancePartition’ version 1.6.0

Help Pages

as.matrix Convert to matrix
as.matrix-method Convert to matrix
calcVarPart Compute variance statistics
calcVarPart-method Compute variance statistics
canCorPairs canCorPairs
colinearityScore Collinearity score
ESS Effective sample size
ESS-method Effective sample size
extractVarPart Extract variance statistics
fitExtractVarPartModel Fit linear (mixed) model, report variance fractions
fitExtractVarPartModel-method Fit linear (mixed) model, report variance fractions
fitVarPartModel Fit linear (mixed) model
fitVarPartModel-method Fit linear (mixed) model
geneCounts Simulation dataset for examples
geneExpr Simulation dataset for examples
getVarianceComponents Extract variance terms
ggColorHue Default colors for ggplot
info Simulation dataset for examples
plotCorrMatrix plotCorrMatrix
plotCorrStructure plotCorrStructure
plotPercentBars Bar plot of variance fractions
plotStratify plotStratify
plotStratifyBy plotStratifyBy
plotVarPart Violin plot of variance fractions
plotVarPart-method Violin plot of variance fractions
residuals Residuals from model fit
residuals-method Residuals from model fit
sortCols Sort variance partition statistics
sortCols-method Sort variance partition statistics
varPartConfInf Linear mixed model confidence intervals
varPartData Simulation dataset for examples