trackViewer-package | Minimal designed plotting tool for genomic data |
$-method | Class '"track"' |
$<--method | Class '"track"' |
addArrowMark | Add arrow mark to the figure at a given position |
addGuideLine | Add guide lines to the tracks |
coverageGR | calculate coverage |
dandelion.plot | dandelion.plots |
geneModelFromTxdb | Prepare gene model from an object of TxDb |
getCurTrackViewport | Get current track viewport |
GRoperator | GRanges operator |
ideogramPlot | plot ideogram with data |
importBam | Reading data from a BAM file |
importData | Reading data from a BED or WIG file to RleList |
importScore | Reading data from a BED or WIG file |
loadIdeogram | load ideogram from UCSC |
lolliplot | Lolliplots |
optimizeStyle | Optimize the style of plot |
parse2GRanges | parse text into GRanges |
parseWIG | convert WIG format track to BED format track |
plotGRanges | plot GRanges data |
pos | Class '"pos"' |
pos-class | Class '"pos"' |
setTrackStyleParam | Class '"track"' |
setTrackStyleParam-method | Class '"track"' |
setTrackViewerStyleParam | Class '"trackViewerStyle"' |
setTrackViewerStyleParam-method | Class '"trackViewerStyle"' |
setTrackXscaleParam | Class '"track"' |
setTrackXscaleParam-method | Class '"track"' |
setTrackYaxisParam | Class '"track"' |
setTrackYaxisParam-method | Class '"track"' |
show-method | Class '"track"' |
track | Class '"track"' |
track-class | Class '"track"' |
trackList | List of tracks |
trackList-class | List of tracks |
trackStyle | Class '"trackStyle"' |
trackStyle-class | Class '"trackStyle"' |
trackViewer | Minimal designed plotting tool for genomic data |
trackViewerStyle | Class '"trackViewerStyle"' |
trackViewerStyle-class | Class '"trackViewerStyle"' |
viewTracks | plot the tracks |
xscale | Class '"xscale"' |
xscale-class | Class '"xscale"' |
yaxisStyle | Class '"yaxisStyle"' |
yaxisStyle-class | Class '"yaxisStyle"' |