splatter-package | splatter. |
addFeatureStats | Add feature statistics |
addGeneLengths | Add gene lengths |
bridge | Brownian bridge |
compareSCESets | Compare SCESet objects |
diffSCESets | Diff SCESet objects |
expandParams | Expand parameters |
expandParams-method | Expand parameters |
getLNormFactors | Get log-normal factors |
getParam | Get a parameter |
getParam-method | Get a parameter |
getParams | Get parameters |
getPathOrder | Get path order |
listSims | List simulations |
logistic | Logistic function |
lun2Estimate | Estimate Lun2 simulation parameters |
lun2Estimate.matrix | Estimate Lun2 simulation parameters |
lun2Estimate.SCESet | Estimate Lun2 simulation parameters |
Lun2Params | The Lun2Params class |
Lun2Params-class | The Lun2Params class |
lun2Simulate | Lun2 simulation |
lunEstimate | Estimate Lun simulation parameters |
lunEstimate.matrix | Estimate Lun simulation parameters |
lunEstimate.SCESet | Estimate Lun simulation parameters |
LunParams | The LunParams class |
LunParams-class | The LunParams class |
lunSimulate | Lun simulation |
makeCompPanel | Make comparison panel |
makeDiffPanel | Make difference panel |
makeOverallPanel | Make overall panel |
newLun2Params | New Params |
newLunParams | New Params |
newParams | New Params |
newSCDDParams | New Params |
newSimpleParams | New Params |
newSplatParams | New Params |
Params | The Params virtual class |
Params-class | The Params virtual class |
rbindMatched | Bind rows (matched) |
scDDEstimate | Estimate scDD simulation parameters |
scDDEstimate.matrix | Estimate scDD simulation parameters |
scDDEstimate.SCESet | Estimate scDD simulation parameters |
SCDDParams | The SCDDParams class |
SCDDParams-class | The SCDDParams class |
scDDSimulate | scDD simulation |
setParam | Set a parameter |
setParam-method | Set a parameter |
setParams | Set parameters |
setParamsUnchecked | Set parameters UNCHECKED |
setParamUnchecked | Set a parameter UNCHECKED |
setParamUnchecked-method | Set a parameter UNCHECKED |
showPP | Show pretty print |
simpleEstimate | Estimate simple simulation parameters |
simpleEstimate.matrix | Estimate simple simulation parameters |
simpleEstimate.SCESet | Estimate simple simulation parameters |
SimpleParams | The SimpleParams class |
SimpleParams-class | The SimpleParams class |
simpleSimulate | Simple simulation |
splatEstBCV | Estimate Splat Biological Coefficient of Variation parameters |
splatEstDropout | Estimate Splat dropout parameters |
splatEstimate | Estimate Splat simulation parameters |
splatEstimate.matrix | Estimate Splat simulation parameters |
splatEstimate.SCESet | Estimate Splat simulation parameters |
splatEstLib | Estimate Splat library size parameters |
splatEstMean | Estimate Splat mean parameters |
splatEstOutlier | Estimate Splat expression outlier parameters |
SplatParams | The SplatParams class |
SplatParams-class | The SplatParams class |
splatSimBCVMeans | Simulate BCV means |
splatSimCellMeans | Simulate cell means |
splatSimDE | Simulate group differential expression |
splatSimDropout | Simulate dropout |
splatSimGeneMeans | Simulate gene means |
splatSimGroupCellMeans | Simulate cell means |
splatSimGroupDE | Simulate group differential expression |
splatSimLibSizes | Simulate library sizes |
splatSimPathCellMeans | Simulate cell means |
splatSimPathDE | Simulate group differential expression |
splatSimSingleCellMeans | Simulate cell means |
splatSimTrueCounts | Simulate true counts |
splatSimulate | Splat simulation |
splatSimulateGroups | Splat simulation |
splatSimulatePaths | Splat simulation |
splatSimulateSingle | Splat simulation |
splatter | splatter. |
summariseDiff | Summarise diffSCESets |
winsorize | Winsorize vector |