PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data


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Documentation for package ‘ropls’ version 1.8.0

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ropls-package PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data
aminoacids Amino-Acids Dataset
cellulose NIR-Viscosity example data set to illustrate multivariate calibration using PLS, spectral filtering and OPLS
checkW4M Checking the consistency of an ExpressionSet instance with W4M format
checkW4M-method Checking the consistency of an ExpressionSet instance with W4M format
coef-method Coefficients method for (O)PLS models
coef.opls Coefficients method for (O)PLS models
cornell Octane of various blends of gasoline
fitted-method Fitted method for 'opls' objects
fitted.opls Fitted method for 'opls' objects
foods Food consumption patterns accross European countries (FOODS)
fromW4M fromW4M
getLoadingMN getLoadingMN method for PCA/(O)PLS(-DA) models
getLoadingMN-method getLoadingMN method for PCA/(O)PLS(-DA) models
getPcaVarVn getPcaVarVn method for PCA models
getPcaVarVn-method getPcaVarVn method for PCA models
getScoreMN getScoreMN method for PCA/(O)PLS(-DA) models
getScoreMN-method getScoreMN method for PCA/(O)PLS(-DA) models
getSubsetVi getSubsetVi method for (O)PLS(-DA) models
getSubsetVi-method getSubsetVi method for (O)PLS(-DA) models
getSummaryDF getSummaryDF method for PCA/(O)PLS models
getSummaryDF-method getSummaryDF method for PCA/(O)PLS models
getVipVn getVipVn method for (O)PLS(-DA) models
getVipVn-method getVipVn method for (O)PLS(-DA) models
getWeightMN getWeightMN method for (O)PLS(-DA) models
getWeightMN-method getWeightMN method for (O)PLS(-DA) models
linnerud Linnerud Dataset
lowarp A multi response optimization data set (LOWARP)
mark 'mark' Dataset
opls PCA, PLS(-DA), and OPLS(-DA)
opls-class Class "opls"
opls-method PCA, PLS(-DA), and OPLS(-DA)
plot-method Plot Method for (O)PLS(-DA)
plot.opls Plot Method for (O)PLS(-DA)
predict-method Predict method for (O)PLS models
predict.opls Predict method for (O)PLS models
print-method Print method for 'opls' objects
print.opls Print method for 'opls' objects
residuals-method Residuals method for (O)PLS models
residuals.opls Residuals method for (O)PLS models
ropls PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data
sacurine Analysis of the human adult urinary metabolome variations with age, body mass index and gender
show-method Show method for 'opls' objects
show.opls Show method for 'opls' objects
strF Printed summary of an R object
tested Tested method for (O)PLS models
tested-method Tested method for (O)PLS models
toW4M Exporting ExpressionSet instance into 3 tabulated files.
toW4M-method Exporting ExpressionSet instance into 3 tabulated files.