PANDA Algorithm


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Documentation for package ‘pandaR’ version 1.8.0

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pandaR-package pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions.
calcDegree Calculate regulatory network degree
calcDegreeDifference Calculate difference in degrees
importPandaMatlab Panda Matlab importer
multiplot Multiple plots
panda Passing Messages between Biological Networks to Refine Predicted Interactions
pandaR pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions.
pandaResult Analysis result from PANDA algorithm on toy data
pandaResultPairs Analysis result from PANDA algorithm on toy data converted into pairs
pandaToyData Toy gene expression, motif, and ppi data
plot.panda Plot.panda
plotCommunityDetection Community detection plot
plotGraph Plot graph
plotZ Comparison of Z scores between two PANDA runs
plotZbyTF Plot Z by TF out-degree quantiles
print.panda print.panda
subnetwork Subnetwork
summary.panda Summary.panda
targetedGenes targetedGenes
testMotif Check motif
topedges Top edges