Accesses MyVariant.info variant query and annotation services


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Documentation for package ‘myvariant’ version 1.6.0

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formatHgvs Get all HGVS IDs from Vcf object.
formatSingleHgvs Get Hgvs HGVS ID from chromosome, position, reference and alternate alleles.
getVariant Return the variant object for the given HGVS id.
getVariant-method Return the variant object for the given HGVS id.
getVariants Return the list of variant objects for the given list of HGVS ids.
getVariants-method Return the list of variant objects for the given list of HGVS ids.
metadata metadata
metadata-method metadata
MyVariant MyVariant
myvariant Access MyVariant.info variant annotation services
MyVariant-class Class '"MyVariant"'
queryVariant Return the query result.
queryVariant-method Return the query result.
queryVariants Return the batch query result.
queryVariants-method Return the batch query result.