Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect


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Documentation for package ‘methylInheritance’ version 1.0.0

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methylInheritance-package methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect
demoForTransgenerationalAnalysis The methylation information from samples over three generations. Information for each generation is stored in a 'methylRawList' format (for demo purpose).
extractInfo Extract the information specific to a subsection of the permutation analysis
loadAllRDSResults Load all RDS files created by the permutation and observation analysis
mergePermutationAndObservation Merge the permutation results with the observation results.
methylInheritance methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect
methylInheritanceResults All observed and permutation results formatted in a 'methylInheritanceResults' class (for demo purpose).
plotGraph Generate a graph for a permutation analysis
print.methylInheritanceAllResults Print a 'methylInheritanceAllResults' object
runObservation Run a differential methylation analysis on multi-generational dataset
runPermutation Run all permutations on the specified multi-generational dataset
samplesForTransgenerationalAnalysis All samples information, formated by 'methylKit', in a 'methylRawList' format (for demo purpose).