methylInheritance-package |
methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect |
demoForTransgenerationalAnalysis |
The methylation information from samples over three generations. Information for each generation is stored in a 'methylRawList' format (for demo purpose). |
extractInfo |
Extract the information specific to a subsection of the permutation analysis |
loadAllRDSResults |
Load all RDS files created by the permutation and observation analysis |
mergePermutationAndObservation |
Merge the permutation results with the observation results. |
methylInheritance |
methylInheritance: Permutation-Based Analysis associating Conserved Differentially Methylated Elements from One Generation to the Next to a Treatment Effect |
methylInheritanceResults |
All observed and permutation results formatted in a 'methylInheritanceResults' class (for demo purpose). |
plotGraph |
Generate a graph for a permutation analysis |
print.methylInheritanceAllResults |
Print a 'methylInheritanceAllResults' object |
runObservation |
Run a differential methylation analysis on multi-generational dataset |
runPermutation |
Run all permutations on the specified multi-generational dataset |
samplesForTransgenerationalAnalysis |
All samples information, formated by 'methylKit', in a 'methylRawList' format (for demo purpose). |