Package: metagenomeFeatures
Title: Exploration of marker-gene sequence taxonomic annotations
Version: 1.8.1
Author: Nathan D. Olson, Joseph Nathaniel Paulson, Hector Corrada Bravo
Maintainer: Nathan D. Olson <nolson@umiacs.umd.edu>
Description: metagenomeFeatures was developed for use in exploring
    the taxonomic annotations for a marker-gene metagenomic sequence
    dataset. The package can be used to explore the taxonomic
    composition of a marker-gene database or annotated sequences from a
    marker-gene metagenome experiment.
Depends: R (>= 3.4), Biobase (>= 2.17.8)
License: Artistic-2.0
LazyData: true
Imports: Biostrings (>= 2.36.4), ShortRead (>= 1.26.0), dplyr (>=
        0.7.0), dbplyr(>= 1.0.0), stringr (>= 1.0.0), lazyeval (>=
        0.1.10), RSQLite (>= 1.0.0), magrittr (>= 1.5), methods (>=
        3.3.1), lattice (>= 0.20.33), metagenomeSeq (>= 1.14.2), ape
        (>= 3.5), purrr (>= 0.2.2)
Suggests: knitr (>= 1.11), msd16s (>= 0.102.0), testthat (>= 0.10.0),
        rmarkdown (>= 1.3)
Collate: 'utils.R' 'phylo-class.R' 'mgDb-class.R' 'mgFeatures-class.R'
        'demoMgDb.R' 'mgDb-taxa_accessors.R' 'aggregate_taxa.R'
        'mgQuery.R' 'vignette_data.R' 'mgDb_method_annotateMRexp.R'
        'mgDb_method_select.R' 'mgDb_method_annotateFeatures.R'
        'mockMgDb.R' 'mock_query_df.R' 'mock_mgF.R'
VignetteBuilder: knitr
URL: https://github.com/HCBravoLab/metagenomeFeatures
BugReports: https://github.com/HCBravoLab/metagenomeFeatures/issues
biocViews: Microbiome, Metagenomics, Annotation, Infrastructure,
        Sequencing, Software
NeedsCompilation: no
RoxygenNote: 6.0.1
Packaged: 2017-07-19 01:53:11 UTC; biocbuild
Built: R 3.4.1; ; 2017-07-19 14:19:05 UTC; unix
