Package: metagene
Version: 2.8.0
Date: 2014-05-05
Title: A package to produce metagene plots
Author: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>,
    Fabien Claude Lamaze <fabien.lamaze.1@ulaval.ca>, Rawane Samb
    <rawane.samb.1@ulaval.ca>, Astrid Louise Deschenes
    <Astrid-Louise.Deschenes@crchudequebec.ulaval.ca> and Arnaud Droit
    <arnaud.droit@crchuq.ulaval.ca>.
Author@R: c(person("Charles", "Joly Beauparlant",
        email="charles.joly-beauparlant@crchul.ulaval.ca"),
        person("Fabien Claude", "Lamaze",
        email="fabien.lamaze.1@ulaval.ca"), person("Rawane", "Samb",
        email="rawane.samb.1@ulaval.ca"), person("Astrid
        Louise","Deschenes",
        email="Astrid-Louise.Deschenes@crchudequebec.ulaval.ca"),
        person("Arnaud", "Droit",
        email="arnaud.droit@crchuq.ulaval.ca"))
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
Description: This package produces metagene plots to compare the behavior of
    DNA-interacting proteins at selected groups of genes/features. Bam files
    are used to increase the resolution. Multiple combination of group of bam
    files and/or group of genomic regions can be compared in a single analysis.
    Bootstraping analysis is used to compare the groups and locate regions with
    statistically different enrichment profiles.
biocViews: ChIPSeq, Genetics, MultipleComparison, Coverage, Alignment,
        Sequencing
License: Artistic-2.0 | file LICENSE
LazyData: true
BugReports: https://github.com/CharlesJB/metagene/issues
VignetteBuilder: knitr
Depends: R (>= 3.2.0), R6 (>= 2.0), GenomicRanges, BiocParallel
Imports: rtracklayer, gplots, tools, GenomicAlignments, GenomeInfoDb,
        GenomicFeatures, IRanges, ggplot2, muStat, Rsamtools, DBChIP,
        matrixStats
Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown, similaRpeak
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-04-25 01:27:26 UTC; biocbuild
Built: R 3.4.0; ; 2017-04-25 15:29:24 UTC; unix
