# A package to produce metagene plots

## Documentation for package ‘metagene’ version 2.8.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Bam_Handler | A class to manage BAM files.
get_demo_bam_files | Get BAM filenames for demo
get_demo_design | Get a demo design object
get_demo_metagene | Get a demo metagene object
get_demo_regions | Get regions filenames for demo
get_promoters_txdb | Extract Entrez genes promoters from TxDb object.
metagene | A class to manage metagene analysis.
permutation_test | Perform a permutation test on 2 matrices
plot_metagene | Produce a metagene plot
promoters_hg18 | Promoters regions of hg18 Entrez genes.
promoters_hg19 | Promoters regions of hg19 Entrez genes.
promoters_mm10 | Promoters regions of mm10 Entrez genes.
promoters_mm9 | Promoters regions of mm9 Entrez genes.