geneplast-package |
Geneplast: an R package for evolutionary rooting and plasticity inference based on orthologous groups distribution. |
geneplast |
Geneplast: an R package for evolutionary rooting and plasticity inference based on orthologous groups distribution. |
gpdata.gs |
A pre-processed dataset for the geneplast package. |
gplast |
Evolutionary plasticity inference. |
gplast-method |
Class '"OGP"': an S4 class for genetic plasticity analysis. |
gplast.get |
Get information from individual slots in an OGP object. |
gplast.get-method |
Class '"OGP"': an S4 class for genetic plasticity analysis. |
gplast.preprocess |
Evolutionary plasticity inference. |
groot |
Evolutionary rooting inference. |
groot-method |
Class '"OGR"': an S4 class for rooting analysis. |
groot.get |
Get information from individual slots in an OGR object. |
groot.get-method |
Class '"OGR"': an S4 class for rooting analysis. |
groot.plot |
Plot the inferred evolutionary root of a given OG or the map of LCAs of a given species. |
groot.preprocess |
Evolutionary rooting inference. |
OGP-class |
Class '"OGP"': an S4 class for genetic plasticity analysis. |
OGR-class |
Class '"OGR"': an S4 class for rooting analysis. |