c-method | Subsetting and combining CyData |
cbind-method | Subsetting and combining CyData |
cellAssignments | CyData getters and setters |
cellAssignments-method | CyData getters and setters |
cellAssignments<- | CyData getters and setters |
cellAssignments<--method | CyData getters and setters |
cellData | CyData getters and setters |
cellData-method | CyData getters and setters |
cellData<- | CyData getters and setters |
cellData<--method | CyData getters and setters |
cellIntensities | CyData getters and setters |
cellIntensities-method | CyData getters and setters |
cellIntensities<- | CyData getters and setters |
cellIntensities<--method | CyData getters and setters |
countCells | Count cells in high-dimensional space |
CyData | CyData class and methods |
CyData-class | CyData class and methods |
diffIntDistr | Compute differences in intensity distributions |
dnaGate | Gate events based on DNA channels |
expandRadius | Expand the hypersphere radius |
findFirstSphere | Identifies the first non-redundant hyperspheres |
intensities | CyData getters and setters |
intensities-method | CyData getters and setters |
intensities<- | CyData getters and setters |
intensities<--method | CyData getters and setters |
intensityRanges | Define intensity ranges |
interpretSpheres | Interactive interpretation of hyperspheres |
markerData | CyData getters and setters |
markerData-method | CyData getters and setters |
markerData<- | CyData getters and setters |
markerData<--method | CyData getters and setters |
markernames | CyData getters and setters |
markernames-method | CyData getters and setters |
markernames<- | CyData getters and setters |
markernames<--method | CyData getters and setters |
medIntensities | Compute median marker intensities |
ncells | CyData getters and setters |
ncells-method | CyData getters and setters |
neighborDistances | Compute distances to neighbors |
nmarkers | CyData getters and setters |
nmarkers-method | CyData getters and setters |
normalizeBatch | Normalize intensities across batches |
outlierGate | Create an outlier gate |
packIndices | Pack or unpack indices |
pickBestMarkers | Pick best markers |
plotCellIntensity | Plot cell or hypersphere data |
plotCellLogFC | Plot cell or hypersphere data |
poolCells | Pool cells for pre-processing |
prepareCellData | Prepare mass cytometry data |
rbind-method | Subsetting and combining CyData |
recountCells | Recount cells in each group |
sampleNames | CyData getters and setters |
sampleNames-method | CyData getters and setters |
sampleNames<- | CyData getters and setters |
sampleNames<--method | CyData getters and setters |
show-method | CyData class and methods |
spatialFDR | Compute the spatial FDR |
subset-method | Subsetting and combining CyData |
unpackIndices | Pack or unpack indices |
[-method | Subsetting and combining CyData |
[<--method | Subsetting and combining CyData |