Prediction of intronic splicing branchpoints


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Documentation for package ‘branchpointer’ version 1.0.0

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getQueryLoc Find the closest 3' and 5' exons to a branchpointer query
gtfToExons Convert GTF file to exon location file
makeRegions Make branchpoint window regions
plotBranchpointWindow Plots branchpointer predictions
plotStructure Plots transcript structures
predictBranchpoints Predict branchpoint probability scores
predictionsToStats Convert SNP branchpoint predictions across the branchpoint window to an intronic summary
readQueryFile Read a query file
snpToQuery Gets a branchpointer formatted query from refsnp ids