Make an R function available in the Galaxy web platform


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Documentation for package ‘RGalaxy’ version 1.20.1

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addTwoNumbers Add two numbers
addTwoNumbersWithTest Add two numbers (with functional test)
anotherTestFunction Add two matrices
foo a foo function
functionToGalaxify Add two matrices
galaxy Make a function available in Galaxy
GalaxyCharacterParam Galaxy Parameter Classes
GalaxyCharacterParam-class Galaxy Parameter Classes
GalaxyClasses Galaxy Parameter Classes
GalaxyConfig Class '"GalaxyConfig"'
GalaxyConfig-class Class '"GalaxyConfig"'
GalaxyInputFile Class '"GalaxyInputFile"'
GalaxyInputFile-class Class '"GalaxyInputFile"'
GalaxyIntegerParam Galaxy Parameter Classes
GalaxyIntegerParam-class Galaxy Parameter Classes
GalaxyLogicalParam Galaxy Parameter Classes
GalaxyLogicalParam-class Galaxy Parameter Classes
GalaxyNumericParam Galaxy Parameter Classes
GalaxyNumericParam-class Galaxy Parameter Classes
GalaxyOutput Class '"GalaxyOutput"'
GalaxyOutput-class Class '"GalaxyOutput"'
GalaxyParam Galaxy Parameter Classes
GalaxySelectParam Galaxy Parameter Classes
GalaxySelectParam-class Galaxy Parameter Classes
getFriendlyName Change a camelCase name to a friendlier version
gmessage Sends informational, warning, and error messages to the user.
gstop Sends informational, warning, and error messages to the user.
gwarning Sends informational, warning, and error messages to the user.
probeLookup Get the PFAM and SYMBOL names for a set of Affymetrix probe IDs
RserveConnection Class '"RserveConnection"'
RserveConnection-class Class '"RserveConnection"'
runFunctionalTest Run the functional test associated with a function.
testFunctionWithGalaxySelectParam A variation on functionToGalaxify that takes a multiple-choice option using the GalaxySelectParam class.
testFunctionWithSelect A variation on functionToGalaxify that takes a multiple-choice option.