Repetitive Element Methylation Prediction


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Documentation for package ‘REMP’ version 1.0.7

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REMP-package Repetitive Element Methylation Prediction
Alu.demo Subset of Alu sequence dataset
annotation REMProduct instances
annotation-method REMProduct instances
decodeAnnot REMProduct instances
decodeAnnot-method REMProduct instances
details REMProduct instances
details-method REMProduct instances
fetchRefSeqGene Get RefSeq gene database
fetchRMSK Get RE database from RepeatMasker
findRECpG Find RE-CpG genomic location given RE ranges information
getBackend Get BiocParallel back-end
getGM12878 Get methylation data of HapMap LCL sample GM12878 profiled by Illumina 450k array or EPIC array
getILMN REMParcel instances
getILMN-method REMParcel instances
getRE REMParcel instances
getRE-method REMParcel instances
getRECpG REMParcel instances
getRECpG-method REMParcel instances
getRefGene REMParcel instances
getRefGene-method REMParcel instances
GRannot Annotate genomic ranges data with gene region information.
grooMethy Groom methylation data to fix potential data issues
imp REMProduct instances
imp-method REMProduct instances
initREMP RE Annotation Database Initialization
plot-method REMProduct instances
REMP Repetitive Element Methylation Prediction
remp Repetitive element methylation prediction
REMParcel REMParcel instances
REMParcel-class REMParcel instances
rempB REMProduct instances
rempB-method REMProduct instances
rempM REMProduct instances
rempM-method REMProduct instances
rempQC REMProduct instances
rempQC-method REMProduct instances
REMProduct REMProduct instances
REMProduct-class REMProduct instances
remp_options Set or get options for REMP package
remp_reset Set or get options for REMP package
saveParcel REMParcel instances
saveParcel-method REMParcel instances
stats REMProduct instances
stats-method REMProduct instances
trim REMProduct instances
trim-method REMProduct instances