REMP-package | Repetitive Element Methylation Prediction |
Alu.demo | Subset of Alu sequence dataset |
annotation | REMProduct instances |
annotation-method | REMProduct instances |
decodeAnnot | REMProduct instances |
decodeAnnot-method | REMProduct instances |
details | REMProduct instances |
details-method | REMProduct instances |
fetchRefSeqGene | Get RefSeq gene database |
fetchRMSK | Get RE database from RepeatMasker |
findRECpG | Find RE-CpG genomic location given RE ranges information |
getBackend | Get BiocParallel back-end |
getGM12878 | Get methylation data of HapMap LCL sample GM12878 profiled by Illumina 450k array or EPIC array |
getILMN | REMParcel instances |
getILMN-method | REMParcel instances |
getRE | REMParcel instances |
getRE-method | REMParcel instances |
getRECpG | REMParcel instances |
getRECpG-method | REMParcel instances |
getRefGene | REMParcel instances |
getRefGene-method | REMParcel instances |
GRannot | Annotate genomic ranges data with gene region information. |
grooMethy | Groom methylation data to fix potential data issues |
imp | REMProduct instances |
imp-method | REMProduct instances |
initREMP | RE Annotation Database Initialization |
plot-method | REMProduct instances |
REMP | Repetitive Element Methylation Prediction |
remp | Repetitive element methylation prediction |
REMParcel | REMParcel instances |
REMParcel-class | REMParcel instances |
rempB | REMProduct instances |
rempB-method | REMProduct instances |
rempM | REMProduct instances |
rempM-method | REMProduct instances |
rempQC | REMProduct instances |
rempQC-method | REMProduct instances |
REMProduct | REMProduct instances |
REMProduct-class | REMProduct instances |
remp_options | Set or get options for REMP package |
remp_reset | Set or get options for REMP package |
saveParcel | REMParcel instances |
saveParcel-method | REMParcel instances |
stats | REMProduct instances |
stats-method | REMProduct instances |
trim | REMProduct instances |
trim-method | REMProduct instances |