calcHpSim |
Compare HP terms based on semantic similarity |
compareHPSets |
Compare 2 sets of HP terms based on semantic similarity |
computeHpIC |
Compute Information Content (IC) for each HP based on genes by HP |
geneByHp |
Entrez gene IDs associated to HP terms (Example data) |
geneByTrait |
Gene associated to trait (Example data) |
geneDef |
Description of genes (Example data) |
hpByTrait |
HP IDs associated to trait (Example data) |
hpDef |
Description of HP terms (Example data) |
hpGeneHeatmap |
HP to Gene heatmap |
hpGeneListComp |
HP semantic similarity for a whole gene list. |
hpSetCompBestMatch |
Best matches between two sets of HP terms |
hpSetCompSummary |
Global semantic similarity between 2 HP sets |
hp_ancestors |
HP ancestors (Example data) |
hp_class |
HP class (Example data) |
hp_descendants |
HP descendants (Example data) |
hqStrNw |
STRIND database network of Homo sapiens genes (Example data) |
hsEntrezByRPath |
Homo sapiens entrez gene ID by Reactome pathway (Example data) |
rPath |
Reactome pathways (Example data) |
traitDef |
Description of Traits (Example data) |