dplyr-based Access to Bioconductor Annotation Resources


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Documentation for package ‘Organism.dplyr’ version 1.2.2

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AccnumFilter Filtering src_organism objects
AliasFilter Filtering src_organism objects
BasicFilter-class Filtering src_organism objects
cds-method Extract genomic features from src_organism objects
cdsBy-method Extract genomic features from src_organism objects
cdsBy_tbl Extract genomic features from src_organism objects
CdsChromFilter Filtering src_organism objects
CdsEndFilter Filtering src_organism objects
CdsIdFilter Filtering src_organism objects
CdsNameFilter Filtering src_organism objects
CdsStartFilter Filtering src_organism objects
CdsStrandFilter Filtering src_organism objects
cds_tbl Extract genomic features from src_organism objects
columns-method Using the "select" interface on src_organism objects
EnsemblFilter Filtering src_organism objects
EnsemblprotFilter Filtering src_organism objects
EnsembltransFilter Filtering src_organism objects
EntrezFilter Filtering src_organism objects
EnzymeFilter Filtering src_organism objects
EvidenceallFilter Filtering src_organism objects
EvidenceFilter Filtering src_organism objects
ExonChromFilter Filtering src_organism objects
ExonEndFilter Filtering src_organism objects
ExonIdFilter Filtering src_organism objects
ExonNameFilter Filtering src_organism objects
ExonRankFilter Filtering src_organism objects
exons-method Extract genomic features from src_organism objects
exonsBy-method Extract genomic features from src_organism objects
exonsBy_tbl Extract genomic features from src_organism objects
ExonStartFilter Filtering src_organism objects
ExonStrandFilter Filtering src_organism objects
exons_tbl Extract genomic features from src_organism objects
fiveUTRsByTranscript-method Extract genomic features from src_organism objects
fiveUTRsByTranscript_tbl Extract genomic features from src_organism objects
FlybaseCgFilter Filtering src_organism objects
FlybaseFilter Filtering src_organism objects
FlybaseProtFilter Filtering src_organism objects
GeneChromFilter Filtering src_organism objects
GeneEndFilter Filtering src_organism objects
GenenameFilter Filtering src_organism objects
genes-method Extract genomic features from src_organism objects
GeneStartFilter Filtering src_organism objects
GeneStrandFilter Filtering src_organism objects
genes_tbl Extract genomic features from src_organism objects
GoallFilter Filtering src_organism objects
GoFilter Filtering src_organism objects
GRangesFilter Filtering src_organism objects
GRangesFilter-class Filtering src_organism objects
hg38light Utilities used in examples, vignettes, and tests
intronsByTranscript-method Extract genomic features from src_organism objects
intronsByTranscript_tbl Extract genomic features from src_organism objects
IpiFilter Filtering src_organism objects
keys-method Using the "select" interface on src_organism objects
keytypes-method Using the "select" interface on src_organism objects
MapFilter Filtering src_organism objects
mapIds-method Using the "select" interface on src_organism objects
MgiFilter Filtering src_organism objects
mm10light Utilities used in examples, vignettes, and tests
OmimFilter Filtering src_organism objects
OntologyallFilter Filtering src_organism objects
OntologyFilter Filtering src_organism objects
PfamFilter Filtering src_organism objects
PmidFilter Filtering src_organism objects
promoters-method Extract genomic features from src_organism objects
promoters_tbl Extract genomic features from src_organism objects
PrositeFilter Filtering src_organism objects
RefseqFilter Filtering src_organism objects
select-method Using the "select" interface on src_organism objects
select_.tbl_organism Create a sqlite database from TxDb and corresponding Org packages
select_tbl Using the "select" interface on src_organism objects
seqinfo-method Create a sqlite database from TxDb and corresponding Org packages
show-method Filtering src_organism objects
src_organism Create a sqlite database from TxDb and corresponding Org packages
src_tbls.src_organism Create a sqlite database from TxDb and corresponding Org packages
src_ucsc Create a sqlite database from TxDb and corresponding Org packages
supportedFilters Filtering src_organism objects
supportedOrganisms Create a sqlite database from TxDb and corresponding Org packages
SymbolFilter Filtering src_organism objects
tbl.src_organism Create a sqlite database from TxDb and corresponding Org packages
threeUTRsByTranscript-method Extract genomic features from src_organism objects
threeUTRsByTranscript_tbl Extract genomic features from src_organism objects
transcripts-method Extract genomic features from src_organism objects
transcriptsBy-method Extract genomic features from src_organism objects
transcriptsBy_tbl Extract genomic features from src_organism objects
transcripts_tbl Extract genomic features from src_organism objects
TxChromFilter Filtering src_organism objects
TxEndFilter Filtering src_organism objects
TxIdFilter Filtering src_organism objects
TxNameFilter Filtering src_organism objects
TxStartFilter Filtering src_organism objects
TxStrandFilter Filtering src_organism objects
TxTypeFilter Filtering src_organism objects
UnigeneFilter Filtering src_organism objects
UniprotFilter Filtering src_organism objects
WormbaseFilter Filtering src_organism objects
ZfinFilter Filtering src_organism objects