EGSEA-package | Ensemble of Gene Enrichment Analysis (EGSEA) |
$-method | The EGSEAResults class |
$-method | The GSCollectionIndex class |
buildCustomIdx | Custom Gene Set Collection Index |
buildGeneSetDBIdx | Gene Set Collection Indexes from the GeneSetDB Database |
buildIdx | Generate Gene Set Collection Indexes from the MSigDB and KEGG Databases |
buildKEGGIdx | Gene Set Collection Index from the KEGG Database |
buildMSigDBIdx | Gene Set Collection Indexes from the MSigDB Database |
EGSEA | Ensemble of Gene Enrichment Analysis (EGSEA) |
egsea | Ensemble of Gene Set Enrichment Analyses Function |
egsea.base | EGSEA Base GSE Methods |
egsea.cnt | Ensemble of Gene Set Enrichment Analyses Function |
egsea.combine | EGSEA P-value Combining Options |
egsea.logo | Ensemble of Gene Enrichment Analysis (EGSEA) |
egsea.ora | Over-representation Analysis with EGSEA Reporting Capabilities |
egsea.sort | EGSEA Result Sorting Options |
EGSEAResults | The EGSEAResults class |
EGSEAResults-class | The EGSEAResults class |
generateReport | The EGSEAResults class |
generateReport-method | The EGSEAResults class |
getlimmaResults | The EGSEAResults class |
getlimmaResults-method | The EGSEAResults class |
getSetByID | The GSCollectionIndex class |
getSetByID-method | The GSCollectionIndex class |
getSetByName | The GSCollectionIndex class |
getSetByName-method | The GSCollectionIndex class |
getSetScores | The EGSEAResults class |
getSetScores-method | The EGSEAResults class |
GSCollectionIndex | The GSCollectionIndex class |
GSCollectionIndex-class | The GSCollectionIndex class |
limmaTopTable | The EGSEAResults class |
limmaTopTable-method | The EGSEAResults class |
plotBars | The EGSEAResults class |
plotBars-method | The EGSEAResults class |
plotGOGraph | The EGSEAResults class |
plotGOGraph-method | The EGSEAResults class |
plotHeatmap | The EGSEAResults class |
plotHeatmap-method | The EGSEAResults class |
plotMethods | The EGSEAResults class |
plotMethods-method | The EGSEAResults class |
plotPathway | The EGSEAResults class |
plotPathway-method | The EGSEAResults class |
plotSummary | The EGSEAResults class |
plotSummary-method | The EGSEAResults class |
plotSummaryHeatmap | The EGSEAResults class |
plotSummaryHeatmap-method | The EGSEAResults class |
show-method | The EGSEAResults class |
show-method | The GSCollectionIndex class |
showSetByID | The EGSEAResults class |
showSetByID-method | The EGSEAResults class |
showSetByName | The EGSEAResults class |
showSetByName-method | The EGSEAResults class |
summary-method | The EGSEAResults class |
summary-method | The GSCollectionIndex class |
topSets | The EGSEAResults class |
topSets-method | The EGSEAResults class |